rps6e protein (Metallosphaera sedula) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rps6e

PFAM: ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. (212 aa)

Predicted Functional Partners:

rps28e

0.999

rps4e

0.999

rpl7ae

0.999

rps24e

0.999

rps15

0.999

rps17e

0.999

rps7

0.998

rps10

0.998

rps3ae

0.998

rps19

0.998

Your Current Organism:

Metallosphaera sedula

NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpl7ae	rps10	Msed_2132	Msed_0042	LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.997
rpl7ae	rps15	Msed_2132	Msed_2247	LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	PFAM: ribosomal protein S15; ribosomal S13S15-like.	0.998
rpl7ae	rps17e	Msed_2132	Msed_2260	LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	SSU ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.	0.998
rpl7ae	rps19	Msed_2132	Msed_0095	LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.998
rpl7ae	rps24e	Msed_2132	Msed_2222	LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	SSU ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.	0.998
rpl7ae	rps28e	Msed_2132	Msed_0027	LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	PFAM: ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.	0.999
rpl7ae	rps3ae	Msed_2132	Msed_0067	LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	PFAM: ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.	0.998
rpl7ae	rps4e	Msed_2132	Msed_0103	LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	PFAM: RNA-binding S4 domain protein; ribosomal protein S4E-like; ribosomal protein S4E, central; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
rpl7ae	rps6e	Msed_2132	Msed_2244	LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	PFAM: ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
rpl7ae	rps7	Msed_2132	Msed_0040	LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.	0.998
rps10	rpl7ae	Msed_0042	Msed_2132	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	0.997
rps10	rps15	Msed_0042	Msed_2247	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	PFAM: ribosomal protein S15; ribosomal S13S15-like.	0.998
rps10	rps17e	Msed_0042	Msed_2260	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	SSU ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.	0.998
rps10	rps19	Msed_0042	Msed_0095	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
rps10	rps24e	Msed_0042	Msed_2222	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	SSU ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.	0.997
rps10	rps28e	Msed_0042	Msed_0027	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	PFAM: ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.	0.998
rps10	rps3ae	Msed_0042	Msed_0067	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	PFAM: ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.	0.997
rps10	rps4e	Msed_0042	Msed_0103	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	PFAM: RNA-binding S4 domain protein; ribosomal protein S4E-like; ribosomal protein S4E, central; Belongs to the eukaryotic ribosomal protein eS4 family.	0.997
rps10	rps6e	Msed_0042	Msed_2244	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	PFAM: ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.	0.998
rps10	rps7	Msed_0042	Msed_0040	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.	0.999

page 1 of 6

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About