STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Msed_2295PFAM: regulatory protein, AsnC/Lrp family. (86 aa)    
Predicted Functional Partners:
tiaS
tRNA(Ile2) 2-agmatinylcytidine synthetase; ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA.
 
     0.916
Msed_2294
Protein of unknown function DUF367; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family.
       0.799
Msed_1783
Ser/Thr protein kinase-like protein.
 
     0.573
Msed_1202
PFAM: regulatory protein, AsnC/Lrp family.
 
 
 
 0.550
Msed_0619
PFAM: regulatory protein, AsnC/Lrp family.
  
   
 0.543
Msed_1209
PFAM: regulatory protein, AsnC/Lrp family.
 
 
 
 0.539
Msed_1083
Hypothetical protein.
 
     0.504
Msed_0166
PFAM: regulatory protein, AsnC/Lrp family; Helix-turn-helix, type 11 domain protein.
   
 
 0.475
Msed_0688
PFAM: regulatory protein, AsnC/Lrp family.
   
 
 0.475
Msed_1956
PFAM: regulatory protein, AsnC/Lrp family.
   
 
 0.475
Your Current Organism:
Metallosphaera sedula
NCBI taxonomy Id: 399549
Other names: M. sedula DSM 5348, Metallosphaera sedula DSM 5348, Metallosphaera sedula IFO 15509, Metallosphaera sedula JCM 9185, Metallosphaera sedula NBRC 15509, Metallosphaera sedula str. DSM 5348, Metallosphaera sedula strain DSM 5348
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.