STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smar_0010PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pfu:PF1796 putative polyferredoxin. (161 aa)    
Predicted Functional Partners:
Smar_0011
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pho:PH1749 sarcosine oxidase, subunit alpha.
   
 0.998
Smar_0008
PFAM: FAD dependent oxidoreductase; KEGG: pab:PAB1843 sarcosine oxidase, subunit beta.
 
  
 0.974
Smar_0009
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pho:PH1750.1n hypothetical protein.
 
   
 0.961
Smar_0649
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tvo:TVN1111 NADH dehydrogenase I chain I.
  
 
 0.795
Smar_1062
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mta:Moth_2185 4Fe-4S ferredoxin, iron-sulfur binding.
  
 
 0.795
Smar_0668
PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: chy:CHY_0789 aldehyde ferredoxin oxidoreductase, tungsten-containing.
   
 
 0.740
Smar_1199
PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: pho:PH1274 formaldehyde:ferredoxin oxidoreductase.
   
 
 0.740
Smar_1582
PFAM: Aldehyde ferredoxin oxidoreductase-like; KEGG: pfu:PF0464 glyceraldehyde-3-phosphate:ferredoxin oxidoreductase.
   
 
 0.740
hypA
Hydrogenase expression/synthesis, HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
  
  
 0.695
Smar_0018
TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: tko:TK2089 membrane bound hydrogenase, NiFe-hydrogenase small subunit; Belongs to the complex I 20 kDa subunit family.
  
 
 0.574
Your Current Organism:
Staphylothermus marinus
NCBI taxonomy Id: 399550
Other names: S. marinus F1, Staphylothermus marinus ATCC 43588, Staphylothermus marinus DSM 3639, Staphylothermus marinus F1, Staphylothermus marinus JCM 9404, Staphylothermus marinus str. F1, Staphylothermus marinus strain F1
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