STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smar_0019PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: gka:GK3354 NADH:ubiquinone oxidoreductase 27 kD subunit. (148 aa)    
Predicted Functional Partners:
Smar_0030
PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: rpc:RPC_4505 respiratory-chain NADH dehydrogenase, subunit 1.
  
 0.991
Smar_0648
Membrane bound protein complex subunit mbxL; PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: pab:PAB0495 NADH dehydrognease I, subunit D; Belongs to the complex I 49 kDa subunit family.
 
 0.991
Smar_0646
TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: tma:TM1214 NADH dehydrogenase I chain B; Belongs to the complex I 20 kDa subunit family.
  
 0.989
Smar_0649
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tvo:TVN1111 NADH dehydrogenase I chain I.
 
 0.970
Smar_1062
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mta:Moth_2185 4Fe-4S ferredoxin, iron-sulfur binding.
  
 0.965
Smar_0020
PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: rru:Rru_A1425 NADH dehydrogenase (ubiquinone).
  
 
 0.959
Smar_0657
PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: chu:CHU_2620 NADH:ubiquinone oxidoreductase chain H.
  
 0.959
Smar_0023
TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: pab:PAB1398 putative multicomponent Na+:H+ antiporter subunit G.
   
   0.900
Smar_0018
TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: tko:TK2089 membrane bound hydrogenase, NiFe-hydrogenase small subunit; Belongs to the complex I 20 kDa subunit family.
  
  
 0.847
Smar_0029
Hypothetical protein.
       0.812
Your Current Organism:
Staphylothermus marinus
NCBI taxonomy Id: 399550
Other names: S. marinus F1, Staphylothermus marinus ATCC 43588, Staphylothermus marinus DSM 3639, Staphylothermus marinus F1, Staphylothermus marinus JCM 9404, Staphylothermus marinus str. F1, Staphylothermus marinus strain F1
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