STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smar_0048PFAM: regulatory protein, AsnC/Lrp family; Helix-turn-helix, type 11 domain protein; KEGG: pfu:PF1601 transcriptional regulatory protein, asnC family. (146 aa)    
Predicted Functional Partners:
Smar_0047
KEGG: tko:TK0763 hypothetical protein.
       0.934
Smar_0046
PFAM: Desulfoferrodoxin, ferrous iron-binding region; KEGG: tte:TTE2229 putative superoxide reductase.
       0.863
Smar_0954
PFAM: regulatory protein, AsnC/Lrp family; KEGG: sto:STS042 hypothetical transcriptional regulator AsnC.
   
 
 0.551
Smar_0205
PFAM: regulatory protein, AsnC/Lrp family; KEGG: mtp:Mthe_0598 putative transcriptional regulator, AsnC family.
   
 
 0.550
Smar_1451
KEGG: pai:PAE1507 transcriptional regulatory protein, AsnC family.
   
 
 0.550
Smar_0045
PFAM: iron-containing alcohol dehydrogenase; KEGG: mta:Moth_1911 iron-containing alcohol dehydrogenase.
       0.481
Your Current Organism:
Staphylothermus marinus
NCBI taxonomy Id: 399550
Other names: S. marinus F1, Staphylothermus marinus ATCC 43588, Staphylothermus marinus DSM 3639, Staphylothermus marinus F1, Staphylothermus marinus JCM 9404, Staphylothermus marinus str. F1, Staphylothermus marinus strain F1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.