Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Smar_0100PFAM: aminotransferase, class I and II; KEGG: pfu:PF1253 aspartate transaminase. (389 aa)    
Predicted Functional Partners:
Smar_0292
Indolepyruvate ferredoxin oxidoreductase, subunit iorA; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
     
 0.489
Smar_0497
Glutamate dehydrogenase (NADP); PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: ape:APE1386 glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.474
Smar_0099
Hypothetical protein.
       0.468
Smar_0417
KEGG: pai:PAE1774 hypothetical protein.
  
  
 0.440
trpB
Pyridoxal-phosphate dependent TrpB-like enzyme; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.431
Smar_1591
PFAM: aminotransferase class-III; KEGG: pab:PAB0501 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.429
Smar_0553
PFAM: aminotransferase, class V; aminotransferase class-III; KEGG: pfu:PF1472 aspartate/serine transaminase.
  
 
 0.421
Your Current Organism:
Staphylothermus marinus
NCBI taxonomy Id: 399550
Other names: S. marinus F1, Staphylothermus marinus ATCC 43588, Staphylothermus marinus DSM 3639, Staphylothermus marinus F1, Staphylothermus marinus JCM 9404, Staphylothermus marinus str. F1, Staphylothermus marinus strain F1
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