Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Smar_0042 | Smar_0172 | Smar_0042 | Smar_0172 | TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: ape:APE0959 methylated-DNA--protein-cysteine methyltransferase. | KEGG: sfu:Sfum_0352 UspA domain protein. | 0.536 |
Smar_0172 | Smar_0042 | Smar_0172 | Smar_0042 | KEGG: sfu:Sfum_0352 UspA domain protein. | TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: ape:APE0959 methylated-DNA--protein-cysteine methyltransferase. | 0.536 |
Smar_0172 | Smar_0173 | Smar_0172 | Smar_0173 | KEGG: sfu:Sfum_0352 UspA domain protein. | Citrate transporter; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: pho:PH1912 424aa long hypothetical protein. | 0.771 |
Smar_0172 | Smar_0174 | Smar_0172 | Smar_0174 | KEGG: sfu:Sfum_0352 UspA domain protein. | PFAM: phosphoribosyltransferase; KEGG: ape:APE0545 uracil phosphoribosyltransferase. | 0.513 |
Smar_0172 | gap | Smar_0172 | Smar_0241 | KEGG: sfu:Sfum_0352 UspA domain protein. | TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type II; PFAM: glyceraldehyde 3-phosphate dehydrogenase; dihydrodipicolinate reductase; KEGG: sto:ST1356 glyceraldehyde 3-phosphate dehydrogenase. | 0.411 |
Smar_0173 | Smar_0172 | Smar_0173 | Smar_0172 | Citrate transporter; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: pho:PH1912 424aa long hypothetical protein. | KEGG: sfu:Sfum_0352 UspA domain protein. | 0.771 |
Smar_0173 | Smar_0174 | Smar_0173 | Smar_0174 | Citrate transporter; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: pho:PH1912 424aa long hypothetical protein. | PFAM: phosphoribosyltransferase; KEGG: ape:APE0545 uracil phosphoribosyltransferase. | 0.573 |
Smar_0174 | Smar_0172 | Smar_0174 | Smar_0172 | PFAM: phosphoribosyltransferase; KEGG: ape:APE0545 uracil phosphoribosyltransferase. | KEGG: sfu:Sfum_0352 UspA domain protein. | 0.513 |
Smar_0174 | Smar_0173 | Smar_0174 | Smar_0173 | PFAM: phosphoribosyltransferase; KEGG: ape:APE0545 uracil phosphoribosyltransferase. | Citrate transporter; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: pho:PH1912 424aa long hypothetical protein. | 0.573 |
gap | Smar_0172 | Smar_0241 | Smar_0172 | TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type II; PFAM: glyceraldehyde 3-phosphate dehydrogenase; dihydrodipicolinate reductase; KEGG: sto:ST1356 glyceraldehyde 3-phosphate dehydrogenase. | KEGG: sfu:Sfum_0352 UspA domain protein. | 0.411 |