STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smar_0206PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ape:APE2493 hypothetical protein. (516 aa)    
Predicted Functional Partners:
Smar_0205
PFAM: regulatory protein, AsnC/Lrp family; KEGG: mtp:Mthe_0598 putative transcriptional regulator, AsnC family.
       0.556
Smar_0207
PFAM: Conserved TM helix repeat-containing protein; KEGG: pai:PAE1788 conserved within P.aerophilum.
 
     0.556
Smar_0477
PFAM: TatD-related deoxyribonuclease; KEGG: ape:APE1014 hypothetical protein.
  
     0.459
Smar_1104
NMD protein affecting ribosome stability and mRNA decay-like protein; KEGG: tko:TK1297 nonsense-mediated mRNA decay protein NMD3 homolog.
  
     0.458
Smar_1254
PFAM: helix-turn-helix domain protein; KEGG: pfu:PF1851 putative transcriptional regulator.
  
     0.452
Smar_0612
SMART: helix-turn-helix domain protein; KEGG: pfu:PF1386 putative transcriptional regulator.
  
     0.411
Smar_0151
Membrane-anchored protein predicted to be involved in regulation of amylopullulanase-like protein; KEGG: tko:TK1774 amylopullulanase, GH57 family.
  
     0.405
Smar_1007
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pfu:PF1952 hypothetical protein.
  
     0.401
Your Current Organism:
Staphylothermus marinus
NCBI taxonomy Id: 399550
Other names: S. marinus F1, Staphylothermus marinus ATCC 43588, Staphylothermus marinus DSM 3639, Staphylothermus marinus F1, Staphylothermus marinus JCM 9404, Staphylothermus marinus str. F1, Staphylothermus marinus strain F1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.