STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smar_0366Transcriptional regulator, CopG family; PFAM: CopG domain protein DNA-binding domain protein; KEGG: ape:APE0535 hypothetical protein. (136 aa)    
Predicted Functional Partners:
Smar_0365
PFAM: ABC-3 protein; KEGG: ape:APE0534 putative manganese transport system permease protein.
     
 0.939
Smar_0364
PFAM: periplasmic solute binding protein; KEGG: ape:APE0531 putative manganese transport system substrate-binding protein.
       0.934
Smar_0363
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ape:APE0532 putative manganese transport system ATP-binding protein.
     
 0.843
Smar_0367
KEGG: ape:APE0964 hypothetical protein.
       0.831
Your Current Organism:
Staphylothermus marinus
NCBI taxonomy Id: 399550
Other names: S. marinus F1, Staphylothermus marinus ATCC 43588, Staphylothermus marinus DSM 3639, Staphylothermus marinus F1, Staphylothermus marinus JCM 9404, Staphylothermus marinus str. F1, Staphylothermus marinus strain F1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.