STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smar_0437PFAM: photosystem I assembly BtpA; KEGG: mja:MJ1115 hypothetical protein. (260 aa)    
Predicted Functional Partners:
Smar_0441
PFAM: protein of unknown function DUF58; KEGG: pho:PH0774 hypothetical protein.
       0.558
Smar_0440
PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pfu:PF0517 methanol dehydrogenase regulatory protein.
       0.554
Smar_0438
Hypothetical protein.
       0.549
Smar_0439
Hypothetical protein.
       0.549
Smar_0442
Hypothetical protein.
       0.549
Smar_0443
Hypothetical protein.
       0.549
Smar_0057
Peptidase M42 family protein; PFAM: peptidase M18, aminopeptidase I; peptidase M20; peptidase M42 family protein; KEGG: pai:PAE1385 endoglucanase.
  
  
 0.408
Your Current Organism:
Staphylothermus marinus
NCBI taxonomy Id: 399550
Other names: S. marinus F1, Staphylothermus marinus ATCC 43588, Staphylothermus marinus DSM 3639, Staphylothermus marinus F1, Staphylothermus marinus JCM 9404, Staphylothermus marinus str. F1, Staphylothermus marinus strain F1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.