STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smar_0594TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ape:APE2571 heavy-metal transporting ATPase. (600 aa)    
Predicted Functional Partners:
Smar_0031
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: pho:PH1239 hypothetical protein.
     
 0.833
Smar_0595
PFAM: aldo/keto reductase; KEGG: ape:APE1659 K+ channel beta 1 subunit.
  
    0.787
Smar_0593
KEGG: sto:ST0525 hypothetical protein.
       0.520
Smar_1580
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; nucleoside recognition domain protein; KEGG: tko:TK0714 iron(II) transport protein B.
 
 
 0.460
Smar_0596
KEGG: tte:TTE0034 hypothetical protein.
       0.426
Smar_0928
Thioredoxin reductase (NADPH); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: sso:SSO2416 thioredoxin reductase (NADPH).
 
  
 0.406
Your Current Organism:
Staphylothermus marinus
NCBI taxonomy Id: 399550
Other names: S. marinus F1, Staphylothermus marinus ATCC 43588, Staphylothermus marinus DSM 3639, Staphylothermus marinus F1, Staphylothermus marinus JCM 9404, Staphylothermus marinus str. F1, Staphylothermus marinus strain F1
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