STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smar_0769PFAM: DNA polymerase, beta domain protein region; KEGG: pfu:PF0772 hypothetical protein. (134 aa)    
Predicted Functional Partners:
Smar_0768
PFAM: HEPN domain protein; KEGG: pai:PAE0044 hypothetical protein.
 
 
   0.934
Smar_1568
PFAM: protein of unknown function DUF86; KEGG: tko:TK1710 hypothetical protein.
 
 
 
 0.730
Smar_1548
PFAM: protein of unknown function DUF86; KEGG: mac:MA1852 hypothetical protein.
 
 
 
 0.620
Smar_1558
PFAM: protein of unknown function DUF86; KEGG: pai:PAE2506 paREP11.
 
 
 
 0.598
Smar_1515
KEGG: ape:APE0340 hypothetical protein.
  
     0.500
Smar_0674
KEGG: sso:SSO1786 hypothetical protein.
  
     0.445
Smar_0168
ABC-type Na+ efflux pump permease component-like protein; KEGG: pho:PH1531 ABC-2 type transport system permease protein.
  
     0.429
Smar_0150
PFAM: metallophosphoesterase; KEGG: ape:APE0966 hypothetical protein.
  
     0.418
Smar_0767
TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS605 OrfB; KEGG: tko:TK1842 probable transposase.
       0.415
Smar_0102
Glutamine amidotransferase-like protein; KEGG: tko:TK1035 predicted glutamine amidotransferase, class II.
  
     0.407
Your Current Organism:
Staphylothermus marinus
NCBI taxonomy Id: 399550
Other names: S. marinus F1, Staphylothermus marinus ATCC 43588, Staphylothermus marinus DSM 3639, Staphylothermus marinus F1, Staphylothermus marinus JCM 9404, Staphylothermus marinus str. F1, Staphylothermus marinus strain F1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.