STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smar_1251Putative transcriptional regulator, AsnC family; KEGG: ape:APE0784 hypothetical protein. (140 aa)    
Predicted Functional Partners:
Smar_1249
snoRNP protein GAR1; KEGG: pab:PAB3084 hypothetical protein.
       0.567
Smar_1578
KEGG: pai:PAE2941 hypothetical protein.
  
     0.567
Smar_1250
PFAM: Zinc finger, TFIIB-type domain protein; Transcription factor TFIIB, cyclin-related; SMART: Cyclin; KEGG: sto:ST1271 transcription initiation factor TFIIB.
     
 0.558
Smar_0893
KEGG: ape:APE1123 hypothetical protein.
  
     0.534
Smar_0873
KEGG: sai:Saci_1554 30S ribosomal protein S26E.
  
     0.498
Smar_1287
PFAM: protein of unknown function DUF343; KEGG: sto:ST0241 hypothetical protein.
  
     0.496
Smar_0922
Phosphate uptake regulator, PhoU; PFAM: SpoVT/AbrB domain protein; PhoU family protein; KEGG: ape:APE2084 hypothetical protein.
  
  
 0.472
nop10
Nucleolar RNA-binding protein Nop10p; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA.
  
     0.459
srp19
Signal recognition particle, subunit SRP19 (srp19); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
       0.438
Smar_0715
PFAM: Protein of unknown function DUF1610; KEGG: sto:STS026 hypothetical protein.
  
     0.436
Your Current Organism:
Staphylothermus marinus
NCBI taxonomy Id: 399550
Other names: S. marinus F1, Staphylothermus marinus ATCC 43588, Staphylothermus marinus DSM 3639, Staphylothermus marinus F1, Staphylothermus marinus JCM 9404, Staphylothermus marinus str. F1, Staphylothermus marinus strain F1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.