Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lmor_0677 | Lmor_1501 | Lmor_0677 | Lmor_1501 | Signal peptide protein. | Hypothetical protein. | 0.468 |
Lmor_1326 | Lmor_1501 | Lmor_1326 | Lmor_1501 | Putative Ser/Thr protein kinase. | Hypothetical protein. | 0.613 |
Lmor_1500 | Lmor_1501 | Lmor_1500 | Lmor_1501 | Substrate of the Dot/Icm secretion system. | Hypothetical protein. | 0.451 |
Lmor_1501 | Lmor_0677 | Lmor_1501 | Lmor_0677 | Hypothetical protein. | Signal peptide protein. | 0.468 |
Lmor_1501 | Lmor_1326 | Lmor_1501 | Lmor_1326 | Hypothetical protein. | Putative Ser/Thr protein kinase. | 0.613 |
Lmor_1501 | Lmor_1500 | Lmor_1501 | Lmor_1500 | Hypothetical protein. | Substrate of the Dot/Icm secretion system. | 0.451 |
Lmor_1501 | hcr | Lmor_1501 | Lmor_2673 | Hypothetical protein. | Oxidoreductase, FAD-binding protein. | 0.787 |
Lmor_1501 | ndoA | Lmor_1501 | Lmor_1783 | Hypothetical protein. | Rieske domain-containing protein, part of Ubiquinol-cytochrome c reductase. | 0.845 |
Lmor_1501 | ndoR | Lmor_1501 | Lmor_2492 | Hypothetical protein. | Xylene monooxygenase. | 0.728 |
Lmor_1501 | ribA | Lmor_1501 | Lmor_0640 | Hypothetical protein. | Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.689 |
hcr | Lmor_1501 | Lmor_2673 | Lmor_1501 | Oxidoreductase, FAD-binding protein. | Hypothetical protein. | 0.787 |
hcr | ndoA | Lmor_2673 | Lmor_1783 | Oxidoreductase, FAD-binding protein. | Rieske domain-containing protein, part of Ubiquinol-cytochrome c reductase. | 0.815 |
hcr | ndoR | Lmor_2673 | Lmor_2492 | Oxidoreductase, FAD-binding protein. | Xylene monooxygenase. | 0.853 |
hcr | ribA | Lmor_2673 | Lmor_0640 | Oxidoreductase, FAD-binding protein. | Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.780 |
ndoA | Lmor_1501 | Lmor_1783 | Lmor_1501 | Rieske domain-containing protein, part of Ubiquinol-cytochrome c reductase. | Hypothetical protein. | 0.845 |
ndoA | hcr | Lmor_1783 | Lmor_2673 | Rieske domain-containing protein, part of Ubiquinol-cytochrome c reductase. | Oxidoreductase, FAD-binding protein. | 0.815 |
ndoA | ndoR | Lmor_1783 | Lmor_2492 | Rieske domain-containing protein, part of Ubiquinol-cytochrome c reductase. | Xylene monooxygenase. | 0.819 |
ndoR | Lmor_1501 | Lmor_2492 | Lmor_1501 | Xylene monooxygenase. | Hypothetical protein. | 0.728 |
ndoR | hcr | Lmor_2492 | Lmor_2673 | Xylene monooxygenase. | Oxidoreductase, FAD-binding protein. | 0.853 |
ndoR | ndoA | Lmor_2492 | Lmor_1783 | Xylene monooxygenase. | Rieske domain-containing protein, part of Ubiquinol-cytochrome c reductase. | 0.819 |
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