Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cph2_4 | cph2_6 | Lmor_0615 | Lmor_0322 | Regulatory protein (GGDEF domain). | Regulatory protein (GGDEF domain). | 0.998 |
cph2_4 | csrD | Lmor_0615 | Lmor_2914 | Regulatory protein (GGDEF domain). | Two component histidine kinase. | 0.985 |
cph2_4 | fis_2 | Lmor_0615 | Lmor_1579 | Regulatory protein (GGDEF domain). | DNA-binding protein fis; Belongs to the transcriptional regulatory Fis family. | 0.758 |
cph2_4 | gmr_7 | Lmor_0615 | Lmor_2262 | Regulatory protein (GGDEF domain). | Regulatory protein (GGDEF domain). | 0.998 |
cph2_4 | ycgG | Lmor_0615 | Lmor_0289 | Regulatory protein (GGDEF domain). | Rtn protein. | 0.826 |
cph2_4 | yjcC | Lmor_0615 | Lmor_2554 | Regulatory protein (GGDEF domain). | Signal transduction protein (EAL/GGDEF domain protein). | 0.830 |
cph2_6 | cph2_4 | Lmor_0322 | Lmor_0615 | Regulatory protein (GGDEF domain). | Regulatory protein (GGDEF domain). | 0.998 |
cph2_6 | csrD | Lmor_0322 | Lmor_2914 | Regulatory protein (GGDEF domain). | Two component histidine kinase. | 0.985 |
cph2_6 | fis_2 | Lmor_0322 | Lmor_1579 | Regulatory protein (GGDEF domain). | DNA-binding protein fis; Belongs to the transcriptional regulatory Fis family. | 0.758 |
cph2_6 | gmr_7 | Lmor_0322 | Lmor_2262 | Regulatory protein (GGDEF domain). | Regulatory protein (GGDEF domain). | 0.998 |
cph2_6 | ycgG | Lmor_0322 | Lmor_0289 | Regulatory protein (GGDEF domain). | Rtn protein. | 0.827 |
cph2_6 | yjcC | Lmor_0322 | Lmor_2554 | Regulatory protein (GGDEF domain). | Signal transduction protein (EAL/GGDEF domain protein). | 0.829 |
csrD | cph2_4 | Lmor_2914 | Lmor_0615 | Two component histidine kinase. | Regulatory protein (GGDEF domain). | 0.985 |
csrD | cph2_6 | Lmor_2914 | Lmor_0322 | Two component histidine kinase. | Regulatory protein (GGDEF domain). | 0.985 |
csrD | fis_2 | Lmor_2914 | Lmor_1579 | Two component histidine kinase. | DNA-binding protein fis; Belongs to the transcriptional regulatory Fis family. | 0.712 |
csrD | gmr_7 | Lmor_2914 | Lmor_2262 | Two component histidine kinase. | Regulatory protein (GGDEF domain). | 0.986 |
csrD | ycgG | Lmor_2914 | Lmor_0289 | Two component histidine kinase. | Rtn protein. | 0.827 |
csrD | yjcC | Lmor_2914 | Lmor_2554 | Two component histidine kinase. | Signal transduction protein (EAL/GGDEF domain protein). | 0.502 |
dus_1 | fis_2 | Lmor_0280 | Lmor_1579 | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | DNA-binding protein fis; Belongs to the transcriptional regulatory Fis family. | 0.743 |
dus_2 | fis_2 | Lmor_1732 | Lmor_1579 | Nitrogen regulation protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | DNA-binding protein fis; Belongs to the transcriptional regulatory Fis family. | 0.901 |
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