STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfJMembrane protein YdfJ. (741 aa)    
Predicted Functional Partners:
Lmor_2907
Saframycin Mx1 synthetase B.
   
 
 0.859
Lmor_0782
Saframycin Mx1 synthetase B.
   
 
 0.709
Lmor_2003
Hypothetical protein.
       0.680
pksJ
Polyketide synthase, type I.
   
 
 0.675
tycC
Peptide synthetase, non-ribosomal.
   
 
 0.650
Lmor_2000
Bestrophin, RFP-TM, chloride channel.
       0.642
lgrD
Peptide synthetase, non-ribosomal.
   
 
 0.587
Lmor_2002
OmpA-like transmembrane domain protein.
       0.576
Lmor_2515
Transporting ATPase.
       0.568
Lmor_0608
Acetyltransferase.
   
 
 0.516
Your Current Organism:
Legionella moravica
NCBI taxonomy Id: 39962
Other names: ATCC 43877, CCUG 31117, CIP 103883, DSM 19234, L. moravica, NCTC 12239, strain 316-36
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.