STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hypma_004229Uncharacterized protein. (118 aa)    
Predicted Functional Partners:
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.973
EFTUD2
U5 small nuclear ribonucleoprotein component.
   
 0.968
SmE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.961
smd2
Small nuclear ribonucleoprotein Sm D2.
    
 0.959
SmD1
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.957
SMD3A
Small nuclear ribonucleoprotein Sm D3.
   
 0.956
smg1
Small nuclear ribonucleoprotein G.
    
 0.954
Hypma_009574
Putative small nuclear ribonucleoprotein F.
    
 0.953
SART1
U4/U6.U5 tri-snRNP-associated protein 1.
   
 0.944
prp3
U4/U5/U6 small nuclear ribonucleoprotein prp3.
   
 0.944
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.