Hypma_002649 protein (Hypsizygus marmoreus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Hypma_002649

Uncharacterized protein C2F7.02c. (563 aa)

Predicted Functional Partners:

tfg1

0.864

ned1

0.835

tim23

0.816

rpb7

0.803

tfg2

0.776

tim21

0.772

rpb4

0.770

Polr2j

0.762

RPB3

0.749

RPC40

0.749

Your Current Organism:

Hypsizygus marmoreus

NCBI taxonomy Id: 39966
Other names: H. marmoreus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Hypma_002649	Polr2j	A0A369JD59	A0A369K599	Uncharacterized protein C2F7.02c.	DNA-directed RNA polymerase II subunit RPB11.	0.762
Hypma_002649	RPB3	A0A369JD59	A0A369J4J4	Uncharacterized protein C2F7.02c.	DNA-directed RNA polymerase II subunit RPB3.	0.749
Hypma_002649	RPC40	A0A369JD59	A0A369JDE0	Uncharacterized protein C2F7.02c.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.749
Hypma_002649	ned1	A0A369JD59	A0A369JKF0	Uncharacterized protein C2F7.02c.	Nuclear elongation and deformation protein 1; Belongs to the complex I LYR family.	0.835
Hypma_002649	rpb4	A0A369JD59	A0A369JM59	Uncharacterized protein C2F7.02c.	DNA-directed RNA polymerase II subunit rpb4.	0.770
Hypma_002649	rpb7	A0A369JD59	A0A369K9P3	Uncharacterized protein C2F7.02c.	DNA-directed RNA polymerase II subunit rpb7.	0.803
Hypma_002649	tfg1	A0A369JD59	A0A369JQ56	Uncharacterized protein C2F7.02c.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.864
Hypma_002649	tfg2	A0A369JD59	A0A369KGX9	Uncharacterized protein C2F7.02c.	Transcription initiation factor IIF subunit beta.	0.776
Hypma_002649	tim21	A0A369JD59	A0A369K9Y9	Uncharacterized protein C2F7.02c.	Mitochondrial import inner membrane translocase subunit tim21.	0.772
Hypma_002649	tim23	A0A369JD59	A0A369JNK9	Uncharacterized protein C2F7.02c.	Mitochondrial import inner membrane translocase subunit tim23.	0.816
Polr2j	Hypma_002649	A0A369K599	A0A369JD59	DNA-directed RNA polymerase II subunit RPB11.	Uncharacterized protein C2F7.02c.	0.762
Polr2j	RPB3	A0A369K599	A0A369J4J4	DNA-directed RNA polymerase II subunit RPB11.	DNA-directed RNA polymerase II subunit RPB3.	0.997
Polr2j	RPC40	A0A369K599	A0A369JDE0	DNA-directed RNA polymerase II subunit RPB11.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.982
Polr2j	rpb4	A0A369K599	A0A369JM59	DNA-directed RNA polymerase II subunit RPB11.	DNA-directed RNA polymerase II subunit rpb4.	0.996
Polr2j	rpb7	A0A369K599	A0A369K9P3	DNA-directed RNA polymerase II subunit RPB11.	DNA-directed RNA polymerase II subunit rpb7.	0.997
Polr2j	tfg1	A0A369K599	A0A369JQ56	DNA-directed RNA polymerase II subunit RPB11.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.972
Polr2j	tfg2	A0A369K599	A0A369KGX9	DNA-directed RNA polymerase II subunit RPB11.	Transcription initiation factor IIF subunit beta.	0.977
RPB3	Hypma_002649	A0A369J4J4	A0A369JD59	DNA-directed RNA polymerase II subunit RPB3.	Uncharacterized protein C2F7.02c.	0.749
RPB3	Polr2j	A0A369J4J4	A0A369K599	DNA-directed RNA polymerase II subunit RPB3.	DNA-directed RNA polymerase II subunit RPB11.	0.997
RPB3	RPC40	A0A369J4J4	A0A369JDE0	DNA-directed RNA polymerase II subunit RPB3.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.807