STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES1Serine--tRNA ligase, cytoplasmic. (452 aa)    
Predicted Functional Partners:
MTACP2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.928
spt3
SAGA complex subunit spt3.
    
 
 0.923
spt20
SAGA complex subunit spt20.
    
 
 0.921
sgf29
SAGA-associated factor 29.
    
 
 0.916
OVA7
Serine--tRNA ligase, chloroplastic/mitochondrial.
  
  
 
0.909
TAF12
Transcription initiation factor TFIID subunit 12.
    
 
 0.907
taf9
Transcription initiation factor TFIID subunit 9.
    
 
 0.907
gcn5
Histone acetyltransferase gcn5.
    
 
 0.907
ngg1
Chromatin-remodeling complexes subunit ngg1.
    
 
 0.904
TRA1_1
Transcription-associated protein 1; Belongs to the PI3/PI4-kinase family.
    
   0.901
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.