STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RDR1_4RNA-dependent RNA polymerase. (1219 aa)    
Predicted Functional Partners:
Znfx1
NFX1-type zinc finger-containing protein 1.
    
 
 0.467
dcl1_0
Dicer-like protein 1; Belongs to the helicase family. Dicer subfamily.
    
 
 0.447
dcl1_1
Dicer-like protein 1.
    
 
 0.447
dcl2
Dicer-like protein 2; Belongs to the helicase family. Dicer subfamily.
    
 
 0.447
DCL2
Dicer-like protein 2.
    
 
 0.447
cid14
Poly(A) RNA polymerase cid14.
    
 
 0.431
Hypma_010704
Uncharacterized protein.
    
 
 0.431
RPB3
DNA-directed RNA polymerase II subunit RPB3.
    
   0.418
RPB9
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
   0.418
RPB8
DNA-directed RNA polymerases I, II, and III subunit RPABC3.
    
   0.418
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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