STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubp2Putative ubiquitin carboxyl-terminal hydrolase 2; Belongs to the peptidase C19 family. (1436 aa)    
Predicted Functional Partners:
UBIQ
Ubiquitin.
    
 0.925
UFD4
Ubiquitin fusion degradation protein 4.
   
 
 0.844
ubp21
Ubiquitin carboxyl-terminal hydrolase 21; Belongs to the peptidase C19 family.
   
 0.820
Hypma_010088
Uncharacterized protein.
    
  0.814
rrn7
RNA polymerase I-specific transcription initiation factor rrn7.
    
  0.814
Hypma_000125
Uncharacterized protein.
    
  0.814
ned-8
NEDD8.
    
 0.787
ubp14
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.786
Pten
annotation not available
   
 0.770
rhp23
UV excision repair protein rhp23.
    
 0.769
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.