Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LIG | Ogg1 | A0A369JFG3 | A0A369JKM3 | DNA ligase. | N-glycosylase/DNA lyase. | 0.414 |
LIG | PARP2 | A0A369JFG3 | A0A369K933 | DNA ligase. | Poly [ADP-ribose] polymerase. | 0.458 |
LIG | TDP1 | A0A369JFG3 | A0A369J7W9 | DNA ligase. | Tyrosyl-DNA phosphodiesterase 1. | 0.789 |
LIG | aptx | A0A369JFG3 | A0A369JJE9 | DNA ligase. | Aprataxin. | 0.572 |
LIG | pnk1 | A0A369JFG3 | A0A369JGA8 | DNA ligase. | Bifunctional polynucleotide phosphatase/kinase. | 0.848 |
LIG4 | PARP2 | A0A369JT52 | A0A369K933 | DNA ligase. | Poly [ADP-ribose] polymerase. | 0.583 |
LIG4 | TDP1 | A0A369JT52 | A0A369J7W9 | DNA ligase. | Tyrosyl-DNA phosphodiesterase 1. | 0.703 |
LIG4 | aptx | A0A369JT52 | A0A369JJE9 | DNA ligase. | Aprataxin. | 0.597 |
LIG4 | pnk1 | A0A369JT52 | A0A369JGA8 | DNA ligase. | Bifunctional polynucleotide phosphatase/kinase. | 0.790 |
Ogg1 | LIG | A0A369JKM3 | A0A369JFG3 | N-glycosylase/DNA lyase. | DNA ligase. | 0.414 |
Ogg1 | TDP1 | A0A369JKM3 | A0A369J7W9 | N-glycosylase/DNA lyase. | Tyrosyl-DNA phosphodiesterase 1. | 0.465 |
Ogg1 | aptx | A0A369JKM3 | A0A369JJE9 | N-glycosylase/DNA lyase. | Aprataxin. | 0.523 |
PARP2 | LIG | A0A369K933 | A0A369JFG3 | Poly [ADP-ribose] polymerase. | DNA ligase. | 0.458 |
PARP2 | LIG4 | A0A369K933 | A0A369JT52 | Poly [ADP-ribose] polymerase. | DNA ligase. | 0.583 |
PARP2 | TDP1 | A0A369K933 | A0A369J7W9 | Poly [ADP-ribose] polymerase. | Tyrosyl-DNA phosphodiesterase 1. | 0.448 |
PARP2 | aptx | A0A369K933 | A0A369JJE9 | Poly [ADP-ribose] polymerase. | Aprataxin. | 0.522 |
PARP2 | ligA | A0A369K933 | A0A369JD65 | Poly [ADP-ribose] polymerase. | DNA ligase. | 0.489 |
TDP1 | LIG | A0A369J7W9 | A0A369JFG3 | Tyrosyl-DNA phosphodiesterase 1. | DNA ligase. | 0.789 |
TDP1 | LIG4 | A0A369J7W9 | A0A369JT52 | Tyrosyl-DNA phosphodiesterase 1. | DNA ligase. | 0.703 |
TDP1 | Ogg1 | A0A369J7W9 | A0A369JKM3 | Tyrosyl-DNA phosphodiesterase 1. | N-glycosylase/DNA lyase. | 0.465 |
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