STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hypma_010020DUF2052 domain-containing protein. (238 aa)    
Predicted Functional Partners:
Sf3b6
Splicing factor 3B subunit 6.
    
 
 0.924
Hypma_016011
Splicing factor subunit; Belongs to the SF3B5 family.
    
 
 0.913
prp10
U2 snRNP component prp10.
    
 
 0.891
RSE1_1
Pre-mRNA-splicing factor RSE1.
    
 
 0.791
RSE1_0
Pre-mRNA-splicing factor RSE1.
    
 
 0.791
Sf3a1
Splicing factor 3A subunit 1.
   
 
 0.628
Sf3a2
Splicing factor 3A subunit 2.
   
 
 0.626
SF3B4
Splicing factor 3B subunit 4.
    
 
 0.584
sap61
Pre-mRNA-splicing factor sap61.
   
 
 0.563
REB1
DNA-binding protein REB1.
 
      0.475
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.