STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POLX_8Retrovirus-related Pol polyprotein from transposon TNT 1-94. (861 aa)    
Predicted Functional Partners:
Hypma_009671
Integrase catalytic domain-containing protein.
 
     0.755
POLX_3
Retrovirus-related Pol polyprotein from transposon TNT 1-94.
 
     0.584
ssb2_1
Replication factor A protein 2.
    
  0.549
HAT2
Histone acetyltransferase type B subunit 2.
    
 0.543
rad16
DNA repair protein rad16.
    
  0.467
ssb2_0
Replication factor A protein 2.
    
  0.461
aes1_3
Acetylesterase.
    
  0.461
Hypma_012598
Uncharacterized protein.
    
  0.446
ssb1
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
 0.446
niiA
Nitrite reductase [NAD(P)H].
    
  0.446
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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