STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS52Vacuolar protein sorting-associated protein 52 A. (584 aa)    
Predicted Functional Partners:
Hypma_006656
Uncharacterized protein.
   
 0.984
VPS53
Vacuolar protein sorting-associated protein 53.
   
 0.976
TRR1
Thioredoxin reductase.
   
 0.976
Hypma_003088
Uncharacterized protein.
    
 0.966
VPS54
Vacuolar protein sorting-associated protein 54, chloroplastic.
    
 0.966
Hypma_008297
Uncharacterized protein.
    
 0.966
RABH1B
Ras-related protein RABH1b.
    
 0.920
STX10
Syntaxin-10.
    
 0.864
COG8
Conserved oligomeric Golgi complex subunit 8.
   
 0.839
tlg2
t-SNARE affecting a late Golgi compartment protein 2.
    
 0.834
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.