pstB1 protein (Hypsizygus marmoreus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pstB1

Phosphate import ATP-binding protein PstB 1. (241 aa)

Predicted Functional Partners:

tom40

0.766

cut6

0.559

ubp3

0.527

end4

0.516

LEU2

0.503

apm2

0.488

abcA2

0.476

Hypma_009184

0.469

ATM1

0.463

msbA_5

0.463

Your Current Organism:

Hypsizygus marmoreus

NCBI taxonomy Id: 39966
Other names: H. marmoreus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATM1	pstB1	A0A369K9V6	A0A369JQI6	Iron-sulfur clusters transporter ATM1, mitochondrial.	Phosphate import ATP-binding protein PstB 1.	0.463
Hypma_009184	apm2	A0A369JMW7	A0A369JJ55	ENTH domain-containing protein C19F8.03c.	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	0.872
Hypma_009184	end4	A0A369JMW7	A0A369K252	ENTH domain-containing protein C19F8.03c.	Endocytosis protein end4.	0.910
Hypma_009184	pstB1	A0A369JMW7	A0A369JQI6	ENTH domain-containing protein C19F8.03c.	Phosphate import ATP-binding protein PstB 1.	0.469
LEU2	pstB1	A0A369JF39	A0A369JQI6	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.	Phosphate import ATP-binding protein PstB 1.	0.503
abcA2	pstB1	A0A369KCD3	A0A369JQI6	ABC transporter A family member 2.	Phosphate import ATP-binding protein PstB 1.	0.476
apm2	Hypma_009184	A0A369JJ55	A0A369JMW7	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	ENTH domain-containing protein C19F8.03c.	0.872
apm2	end4	A0A369JJ55	A0A369K252	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	Endocytosis protein end4.	0.717
apm2	pstB1	A0A369JJ55	A0A369JQI6	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	Phosphate import ATP-binding protein PstB 1.	0.488
cut6	pstB1	A0A369JME9	A0A369JQI6	Acetyl-CoA carboxylase.	Phosphate import ATP-binding protein PstB 1.	0.559
end4	Hypma_009184	A0A369K252	A0A369JMW7	Endocytosis protein end4.	ENTH domain-containing protein C19F8.03c.	0.910
end4	apm2	A0A369K252	A0A369JJ55	Endocytosis protein end4.	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	0.717
end4	pstB1	A0A369K252	A0A369JQI6	Endocytosis protein end4.	Phosphate import ATP-binding protein PstB 1.	0.516
msbA_5	pstB1	A0A369KDJ5	A0A369JQI6	Lipid A export ATP-binding/permease protein MsbA.	Phosphate import ATP-binding protein PstB 1.	0.463
pstB1	ATM1	A0A369JQI6	A0A369K9V6	Phosphate import ATP-binding protein PstB 1.	Iron-sulfur clusters transporter ATM1, mitochondrial.	0.463
pstB1	Hypma_009184	A0A369JQI6	A0A369JMW7	Phosphate import ATP-binding protein PstB 1.	ENTH domain-containing protein C19F8.03c.	0.469
pstB1	LEU2	A0A369JQI6	A0A369JF39	Phosphate import ATP-binding protein PstB 1.	3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.	0.503
pstB1	abcA2	A0A369JQI6	A0A369KCD3	Phosphate import ATP-binding protein PstB 1.	ABC transporter A family member 2.	0.476
pstB1	apm2	A0A369JQI6	A0A369JJ55	Phosphate import ATP-binding protein PstB 1.	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	0.488
pstB1	cut6	A0A369JQI6	A0A369JME9	Phosphate import ATP-binding protein PstB 1.	Acetyl-CoA carboxylase.	0.559