PXN protein (Hypsizygus marmoreus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PXN

Peroxisomal nicotinamide adenine dinucleotide carrier; Belongs to the mitochondrial carrier (TC 2.A.29) family. (262 aa)

Predicted Functional Partners:

PEX19

0.890

ANT1

0.782

PEX13

0.779

PEX11

0.777

PEX16

0.767

PEX12

0.766

ABCD1

0.751

ABCD2

0.722

Pxmp4

0.714

MSP1_1

0.702

Your Current Organism:

Hypsizygus marmoreus

NCBI taxonomy Id: 39966
Other names: H. marmoreus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCD1	ABCD2	A0A369KFC3	A0A369KB55	ATP-binding cassette sub-family D member 1.	ATP-binding cassette sub-family D member 2.	0.962
ABCD1	ANT1	A0A369KFC3	A0A369K0Y3	ATP-binding cassette sub-family D member 1.	Peroxisomal adenine nucleotide transporter 1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.671
ABCD1	MSP1_1	A0A369KFC3	A0A369IXZ1	ATP-binding cassette sub-family D member 1.	Protein MSP1; Belongs to the AAA ATPase family.	0.667
ABCD1	PEX11	A0A369KFC3	A0A369K7D4	ATP-binding cassette sub-family D member 1.	Peroxisomal membrane protein PMP27.	0.755
ABCD1	PEX12	A0A369KFC3	A0A369JIT1	ATP-binding cassette sub-family D member 1.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.736
ABCD1	PEX13	A0A369KFC3	A0A369JYT8	ATP-binding cassette sub-family D member 1.	Peroxisomal membrane protein PAS20.	0.753
ABCD1	PEX16	A0A369KFC3	A0A369KCY4	ATP-binding cassette sub-family D member 1.	Peroxisomal membrane protein PEX16.	0.732
ABCD1	PEX19	A0A369KFC3	A0A369J5L6	ATP-binding cassette sub-family D member 1.	Peroxisomal biogenesis factor 19.	0.878
ABCD1	PXN	A0A369KFC3	A0A369JSD1	ATP-binding cassette sub-family D member 1.	Peroxisomal nicotinamide adenine dinucleotide carrier; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.751
ABCD1	Pxmp4	A0A369KFC3	A0A369K8L8	ATP-binding cassette sub-family D member 1.	Peroxisomal membrane protein 4.	0.667
ABCD2	ABCD1	A0A369KB55	A0A369KFC3	ATP-binding cassette sub-family D member 2.	ATP-binding cassette sub-family D member 1.	0.962
ABCD2	ANT1	A0A369KB55	A0A369K0Y3	ATP-binding cassette sub-family D member 2.	Peroxisomal adenine nucleotide transporter 1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.698
ABCD2	MSP1_1	A0A369KB55	A0A369IXZ1	ATP-binding cassette sub-family D member 2.	Protein MSP1; Belongs to the AAA ATPase family.	0.667
ABCD2	PEX11	A0A369KB55	A0A369K7D4	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein PMP27.	0.746
ABCD2	PEX12	A0A369KB55	A0A369JIT1	ATP-binding cassette sub-family D member 2.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.736
ABCD2	PEX13	A0A369KB55	A0A369JYT8	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein PAS20.	0.753
ABCD2	PEX16	A0A369KB55	A0A369KCY4	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein PEX16.	0.732
ABCD2	PEX19	A0A369KB55	A0A369J5L6	ATP-binding cassette sub-family D member 2.	Peroxisomal biogenesis factor 19.	0.878
ABCD2	PXN	A0A369KB55	A0A369JSD1	ATP-binding cassette sub-family D member 2.	Peroxisomal nicotinamide adenine dinucleotide carrier; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.722
ABCD2	Pxmp4	A0A369KB55	A0A369K8L8	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein 4.	0.667