STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hypma_009557Uncharacterized protein. (96 aa)    
Predicted Functional Partners:
Hypma_009574
Putative small nuclear ribonucleoprotein F.
   
 0.991
SMD3A
Small nuclear ribonucleoprotein Sm D3.
   
 0.987
SmE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.987
smd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.987
Hypma_010011
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 0.966
EFTUD2
U5 small nuclear ribonucleoprotein component.
   
 0.966
RNU1
U1 small nuclear ribonucleoprotein.
   
 0.965
lea1
U2 small nuclear ribonucleoprotein A.
   
 0.964
Hypma_016011
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.962
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.960
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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