STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSY1Tyrosine--tRNA ligase. (480 aa)    
Predicted Functional Partners:
TYS1
Tyrosine--tRNA ligase.
  
 0.951
uba3
NEDD8-activating enzyme E1 catalytic subunit.
    
 0.901
TRP-1
Tryptophan synthase.
  
  
 0.865
Hypma_016233
tRNA-aminoacylation cofactor arc1.
  
 0.809
lrs1
Putative leucine--tRNA ligase, cytoplasmic.
  
 
 0.739
rar1
Putative methionine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.727
grs1
Putative glycine--tRNA ligase.
  
  
 0.719
prfA
Peptide chain release factor 1.
  
  
 0.713
irs1
Isoleucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.710
maspS
Aspartate--tRNA ligase, mitochondrial.
  
 
 0.710
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.