STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NCBP2Nuclear cap-binding protein subunit 2. (225 aa)    
Predicted Functional Partners:
Cbp80
Nuclear cap-binding protein subunit 1.
   
 0.999
SmE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.994
smg1
Small nuclear ribonucleoprotein G.
   
 0.993
RNU1
U1 small nuclear ribonucleoprotein.
    
 0.993
Hypma_009574
Putative small nuclear ribonucleoprotein F.
   
  0.991
smd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.991
SMD3A
Small nuclear ribonucleoprotein Sm D3.
   
 0.986
Ars2
Serrate RNA effector molecule.
    
 0.983
mex67
mRNA export factor mex67.
   
 0.983
Hypma_016278
Uncharacterized protein.
   
 
 0.982
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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