STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOS1Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (1068 aa)    
Predicted Functional Partners:
spi1
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 0.996
CPR2
Peptidyl-prolyl cis-trans isomerase B.
 
 
 
 0.827
Hypma_016233
tRNA-aminoacylation cofactor arc1.
   
 
 0.785
Cbp80
Nuclear cap-binding protein subunit 1.
   
  
 0.781
sla1
La.
    
 
 0.769
TYS1
Tyrosine--tRNA ligase.
   
 
 0.764
elf1
mRNA export factor elf1.
   
 
 0.744
RIT1
tRNA A64-2'-O-ribosylphosphate transferase.
   
 
 0.718
rar1
Putative methionine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.642
naa40
N-alpha-acetyltransferase 40.
    
   0.611
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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