Hypma_016050 protein (Hypsizygus marmoreus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Hypma_016050

Uncharacterized protein. (88 aa)

Predicted Functional Partners:

ATP4

0.976

atp2

0.946

Hypma_003432

0.852

ATP20

0.807

Hypma_014629

0.778

atp18

0.683

Hypma_001001

0.663

MIC60

0.582

Hypma_014495

0.564

kdm5bb

0.564

Your Current Organism:

Hypsizygus marmoreus

NCBI taxonomy Id: 39966
Other names: H. marmoreus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP20	ATP4	A0A369JNB0	A0A369J9E5	ATP synthase subunit g, mitochondrial.	ATP synthase subunit 4, mitochondrial.	0.997
ATP20	Hypma_001001	A0A369JNB0	A0A369J8P0	ATP synthase subunit g, mitochondrial.	Uncharacterized protein.	0.408
ATP20	Hypma_003432	A0A369JNB0	A0A369J274	ATP synthase subunit g, mitochondrial.	Uncharacterized protein.	0.566
ATP20	Hypma_014495	A0A369JNB0	A0A369J9S4	ATP synthase subunit g, mitochondrial.	Uncharacterized protein.	0.838
ATP20	Hypma_016050	A0A369JNB0	A0A369K424	ATP synthase subunit g, mitochondrial.	Uncharacterized protein.	0.807
ATP20	MIC60	A0A369JNB0	A0A369JU87	ATP synthase subunit g, mitochondrial.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.410
ATP20	atp18	A0A369JNB0	A0A369JUQ0	ATP synthase subunit g, mitochondrial.	ATP synthase subunit J, mitochondrial.	0.619
ATP20	atp2	A0A369JNB0	A0A369JIS9	ATP synthase subunit g, mitochondrial.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.986
ATP20	kdm5bb	A0A369JNB0	A0A369JAI3	ATP synthase subunit g, mitochondrial.	Lysine-specific demethylase 5B-B.	0.838
ATP4	ATP20	A0A369J9E5	A0A369JNB0	ATP synthase subunit 4, mitochondrial.	ATP synthase subunit g, mitochondrial.	0.997
ATP4	Hypma_001001	A0A369J9E5	A0A369J8P0	ATP synthase subunit 4, mitochondrial.	Uncharacterized protein.	0.997
ATP4	Hypma_003432	A0A369J9E5	A0A369J274	ATP synthase subunit 4, mitochondrial.	Uncharacterized protein.	0.785
ATP4	Hypma_014495	A0A369J9E5	A0A369J9S4	ATP synthase subunit 4, mitochondrial.	Uncharacterized protein.	0.948
ATP4	Hypma_014629	A0A369J9E5	A0A369JIV2	ATP synthase subunit 4, mitochondrial.	Uncharacterized protein.	0.996
ATP4	Hypma_016050	A0A369J9E5	A0A369K424	ATP synthase subunit 4, mitochondrial.	Uncharacterized protein.	0.976
ATP4	atp18	A0A369J9E5	A0A369JUQ0	ATP synthase subunit 4, mitochondrial.	ATP synthase subunit J, mitochondrial.	0.983
ATP4	atp2	A0A369J9E5	A0A369JIS9	ATP synthase subunit 4, mitochondrial.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ATP4	kdm5bb	A0A369J9E5	A0A369JAI3	ATP synthase subunit 4, mitochondrial.	Lysine-specific demethylase 5B-B.	0.948
Hypma_001001	ATP20	A0A369J8P0	A0A369JNB0	Uncharacterized protein.	ATP synthase subunit g, mitochondrial.	0.408
Hypma_001001	ATP4	A0A369J8P0	A0A369J9E5	Uncharacterized protein.	ATP synthase subunit 4, mitochondrial.	0.997