STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hypma_014165Putative RNA-binding protein C4F6.14. (453 aa)    
Predicted Functional Partners:
Hypma_006924
RRM domain-containing protein.
   
 
 0.977
RRP12
Ribosomal RNA-processing protein 12.
   
 
 0.966
puf6
Pumilio y domain family member 6.
   
   0.964
Hypma_011425
Brix domain-containing protein C1B9.03c.
   
   0.955
nop2
25S rRNA (Cytosine-C(5))-methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.951
MAK5
ATP-dependent RNA helicase MAK5; Belongs to the DEAD box helicase family.
   
 
 0.947
DRS1
ATP-dependent RNA helicase DRS1; Belongs to the DEAD box helicase family.
   
 
 0.944
NOC1
Ribosome biogenesis protein NOC1.
   
 
 0.941
Hypma_013319
Uncharacterized protein.
   
 
 0.938
ebp2
Putative rRNA-processing protein ebp2.
   
 
 0.936
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.