STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBP1Oligouridylate-binding protein 1. (444 aa)    
Predicted Functional Partners:
pab2
Polyadenylate-binding protein 2.
  
 
 0.836
tif471
Eukaryotic translation initiation factor 4 gamma.
   
 0.797
tif451
Eukaryotic translation initiation factor 4E-1; Belongs to the eukaryotic initiation factor 4E family.
   
 0.796
Cbp80
Nuclear cap-binding protein subunit 1.
    
 0.760
NCBP2
Nuclear cap-binding protein subunit 2.
    
 0.752
Hypma_007977
Uncharacterized protein.
   
 0.750
PAB1_0
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
  
0.744
SMD3A
Small nuclear ribonucleoprotein Sm D3.
   
 0.737
SmE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.732
srp2
Pre-mRNA-splicing factor srp2.
   
 0.720
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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