STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hypma_015242Uncharacterized protein. (1704 aa)    
Predicted Functional Partners:
PRPF19
Pre-mRNA-processing factor 19.
   
 0.980
PRP46
Pre-mRNA-splicing factor PRP46.
   
 0.979
CEF1
Pre-mRNA-splicing factor CEF1.
   
 0.977
cwc15
Pre-mRNA-splicing factor cwc15.
   
 0.976
SYF1
Pre-mRNA-splicing factor SYF1.
    
 
 0.931
Hypma_009574
Putative small nuclear ribonucleoprotein F.
   
   0.921
PRPF8
Pre-mRNA-processing-splicing factor 8.
    
 
 0.920
PRP45
Pre-mRNA-processing protein 45.
   
 
 0.919
SLT11
Pre-mRNA-splicing factor SLT11.
    
 
 0.912
SF3B4
Splicing factor 3B subunit 4.
   
   0.910
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.