STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdi1Rab GDP dissociation inhibitor; Belongs to the Rab GDI family. (449 aa)    
Predicted Functional Partners:
ypt-1
GTP-binding protein ypt1.
   
 0.994
RABH1B
Ras-related protein RABH1b.
   
 0.982
RB11B
Ras-related protein Rab-11B.
   
 0.978
nca2
Nuclear control of ATPase protein 2.
   
 0.974
ypt2
GTP-binding protein ypt2.
   
 0.974
Hypma_001833
Alginate_lyase domain-containing protein.
   
 0.908
RYL2
Ras-like GTP-binding protein RYL2.
   
 0.908
VPS21
Vacuolar protein sorting-associated protein 21.
   
 0.908
RAB5B
Ras-related protein Rab-5B.
   
 0.908
rab7
Ras-related protein rab7.
   
 0.886
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.