STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pol_4Retrovirus-related Pol polyprotein from transposon 17.6. (630 aa)    
Predicted Functional Partners:
Hypma_005935
Integrase catalytic domain-containing protein.
 
     0.582
ssb2_1
Replication factor A protein 2.
    
  0.543
HAT2
Histone acetyltransferase type B subunit 2.
    
 0.543
Hypma_006024
Integrase catalytic domain-containing protein.
 
     0.529
Hypma_008178
RT_RNaseH_2 domain-containing protein.
  
     0.514
pol_2
Retrovirus-related Pol polyprotein from transposon gypsy.
  
     0.501
pol_10
Retrovirus-related Pol polyprotein from transposon opus.
  
     0.500
Hypma_006000
Reverse transcriptase domain-containing protein.
  
     0.499
Hypma_005997
Integrase catalytic domain-containing protein.
 
     0.499
Tf2-6_0
Transposon Tf2-6 polyprotein.
  
     0.492
Your Current Organism:
Hypsizygus marmoreus
NCBI taxonomy Id: 39966
Other names: H. marmoreus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.