STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH12775.1Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family. (275 aa)    
Predicted Functional Partners:
SDH12750.1
Amino acid ABC transporter membrane protein, PAAT family.
  0.999
SDH12729.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
  0.990
SDH68561.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
  0.962
SDH68589.1
Polar amino acid transport system permease protein.
  0.956
SDH21598.1
Glutamate transport system permease protein.
  0.947
SDH21649.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
  0.931
SDH21571.1
Glutamate transport system permease protein.
  0.821
sigA
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
     
 0.545
SDH10259.1
Glutamate synthase (NADH) large subunit.
  
  
 0.476
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.