STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH14500.1Agmatine deiminase; Belongs to the agmatine deiminase family. (347 aa)    
Predicted Functional Partners:
SDH26860.1
N-carbamoylputrescine amidase.
 
 0.985
SDH14471.1
Amidase.
 
     0.891
SDH60953.1
Agmatinase; Belongs to the arginase family.
     
 0.884
SDH14526.1
DNA-binding transcriptional regulator YbjK.
 
     0.658
SDH14444.1
Putative transposase.
       0.588
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.569
SDH14559.1
Purine-cytosine permease; Belongs to the purine-cytosine permease (2.A.39) family.
       0.450
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.438
SDH14589.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.428
SDH14411.1
MFS transporter, MHS family, alpha-ketoglutarate permease.
       0.409
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.