STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH19548.1SWIM zinc finger. (453 aa)    
Predicted Functional Partners:
SDH19570.1
Hypothetical protein.
       0.801
SDH19513.1
2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase.
 
     0.686
SDH51823.1
Zinc uptake regulator, Fur family; Belongs to the Fur family.
  
    0.656
SDH62083.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
  
    0.656
SDH13471.1
Hypothetical protein.
  
     0.513
SDH62214.1
DNA-binding transcriptional regulator, MarR family.
  
    0.510
SDH19483.1
Transcriptional regulator, contains XRE-family HTH domain.
  
    0.453
SDH19451.1
Thioredoxin reductase.
 
     0.446
SDH47294.1
Protein-tyrosine phosphatase.
  
     0.437
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.