STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH20575.1Putative GTP pyrophosphokinase. (310 aa)    
Predicted Functional Partners:
SDH11466.1
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
 0.900
SDH83761.1
XTP/dITP diphosphohydrolase.
    
  0.847
SDH20566.1
Pyridoxal kinase; Belongs to the pyridoxine kinase family.
       0.773
SDH20613.1
DNA/RNA endonuclease G, NUC1.
       0.634
SDH81641.1
Rhamnosyltransferase.
   
    0.590
SDH82049.1
Rhamnosyltransferase.
   
    0.590
SDH20535.1
Glyoxalase-like domain-containing protein.
       0.555
SDH94127.1
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
     
 0.515
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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