STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH27569.1Signal peptidase I. (297 aa)    
Predicted Functional Partners:
SDH27725.1
SipW-cognate class signal peptide.
 
     0.876
SDH27550.1
SipW-cognate class signal peptide.
 
     0.868
SDH27706.1
SipW-cognate class signal peptide.
       0.655
SDH27596.1
Fibronectin type III domain-containing protein.
       0.639
SDH27680.1
Hypothetical protein.
       0.639
SDH94127.1
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
    0.560
SDH17188.1
ATP-dependent DNA ligase LigD ligase module.
    
  0.535
SDH65750.1
LPXTG-motif cell wall anchor domain-containing protein/conserved repeat domain-containing protein.
  
     0.511
rpmF
LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.
 
    0.458
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
  
 
 0.451
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.