STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH28759.1Transmembrane secretion effector. (428 aa)    
Predicted Functional Partners:
SDH28778.1
Helix-turn-helix domain-containing protein.
 
     0.863
SDH28726.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
 
 
   0.700
SDH28707.1
Sporulation and spore germination.
       0.620
SDH28741.1
Two-component system, OmpR family, response regulator MtrA.
       0.620
SDH89498.1
Peptide/nickel transport system substrate-binding protein.
  
     0.620
SDH89581.1
PH domain-containing protein.
  
     0.499
SDH62249.1
Predicted arabinose efflux permease, MFS family.
  
     0.498
SDH89530.1
Peptide/nickel transport system permease protein.
  
     0.470
SDI01863.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
     0.455
SDH28686.1
Predicted amidophosphoribosyltransferases.
       0.428
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.