STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH29921.1Cell wall-associated hydrolase, NlpC family. (251 aa)    
Predicted Functional Partners:
SDH16783.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.750
SDH16814.1
FemAB family protein.
  
     0.740
SDH16849.1
FemAB family protein.
  
     0.739
SDH16884.1
Lipid II:glycine glycyltransferase (Peptidoglycan interpeptide bridge formation enzyme).
  
     0.666
SDH23740.1
Hypothetical protein.
  
     0.573
SDH29933.1
Cell wall-associated hydrolase, NlpC family.
  
   
0.536
SDH29829.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.527
SDH80858.1
Putative cell wall binding repeat 2.
  
  
 0.455
SDH23675.1
Hypothetical protein.
  
    0.447
SDH26148.1
TLP18.3, Psb32 and MOLO-1 founding protein of phosphatase.
 
     0.446
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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