STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH38527.1Hypothetical protein. (1049 aa)    
Predicted Functional Partners:
SDH38717.1
Type VII secretion integral membrane protein EccD.
 
 
   0.878
SDH38751.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
 
 
   0.800
SDH38475.1
YbaB/EbfC DNA-binding family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
    0.777
SDH38441.1
Proteins of 100 residues with WXG; Belongs to the WXG100 family.
       0.773
SDH38360.1
Hypothetical protein.
 
 
  0.696
SDH38781.1
Subtilase family protein.
 
  0.694
SDH38676.1
Type VII secretion protein EccB.
 
     0.674
SDH38566.1
Hypothetical protein.
       0.631
SDH38417.1
Transferase hexapeptide (six repeat-containing protein).
    
  0.623
SDH38320.1
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family.
 
    0.591
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.