STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH43271.1Tripartite ATP-independent transporter solute receptor, DctP family. (337 aa)    
Predicted Functional Partners:
SDH43299.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.972
SDH43331.1
TRAP transporter, DctM subunit.
 
  
 0.971
SDH86866.1
TRAP transporter, DctM subunit.
 
  
 0.877
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.838
SDH43404.1
DNA-binding transcriptional regulator, IclR family.
 
     0.757
SDH43185.1
2-keto-3-deoxy-phosphogluconate aldolase.
 
     0.614
SDH43150.1
2-dehydro-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family.
       0.544
SDH43210.1
2-deoxy-D-gluconate 3-dehydrogenase.
       0.532
SDH43244.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
       0.532
SDH61740.1
Glucuronate isomerase.
 
     0.413
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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