STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH46872.1Nitrogen fixation protein NifU. (150 aa)    
Predicted Functional Partners:
SDH46838.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.999
SDH94958.1
Cysteine desulfurase.
  
 0.999
SDI03626.1
Metal-sulfur cluster biosynthetic enzyme.
 
    0.987
SDI03651.1
Fe-S cluster assembly ATP-binding protein.
 
  
 0.986
SDI03725.1
Iron-regulated ABC transporter permease protein SufD.
 
  
 0.958
SDH48795.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 0.956
SDI03751.1
Iron-regulated ABC transporter membrane component SufB.
 
  
 0.945
SDH38251.1
Hsp70 protein; Belongs to the heat shock protein 70 family.
  
 
 0.902
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.902
SDH44353.1
Protein of unknown function.
   
   0.790
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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