STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH51566.1Uncharacterized conserved protein YaeQ, suppresses RfaH defect. (179 aa)    
Predicted Functional Partners:
SDH51595.1
Predicted arabinose efflux permease, MFS family.
       0.773
SDH65834.1
DNA-binding transcriptional regulator, AcrR family.
  
    0.718
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
   
    0.717
SDH30312.1
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.688
SDH10259.1
Glutamate synthase (NADH) large subunit.
      
 0.670
SDH87420.1
DNA-binding transcriptional regulator YbjK.
   
    0.669
SDH51522.1
Hypothetical protein.
       0.664
SDH51482.1
Hypothetical protein.
       0.460
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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