STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH53193.1Hypothetical protein. (219 aa)    
Predicted Functional Partners:
SDH53228.1
DNA-binding transcriptional regulator, FadR family.
 
     0.942
SDH64498.1
Adenylate cyclase, class 3.
    
 0.911
SDH53307.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
     0.862
SDH27752.1
Fructose-1,6-bisphosphatase II.
    
   0.738
SDH67769.1
GAF domain-containing protein.
 
 
 0.736
SDH53347.1
Putative spermidine/putrescine transport system permease protein.
 
     0.721
SDH53386.1
Putative spermidine/putrescine transport system permease protein.
 
     0.678
SDH53266.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    0.642
SDH82422.1
Hypothetical protein.
  
  
 0.633
SDH53127.1
Hypothetical protein.
       0.608
Your Current Organism:
Agrococcus jejuensis
NCBI taxonomy Id: 399736
Other names: A. jejuensis, Agrococcus jejuensis Lee 2008, DSM 22002, JCM 14256, KCTC 19198, strain SSW1-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.