Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDH22680.1 | SDH55171.1 | SAMN04489720_0471 | SAMN04489720_1591 | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.763 |
SDH22680.1 | SDH78682.1 | SAMN04489720_0471 | SAMN04489720_2386 | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.442 |
SDH55141.1 | SDH55171.1 | SAMN04489720_1590 | SAMN04489720_1591 | Hypothetical protein. | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.639 |
SDH55141.1 | SDH55203.1 | SAMN04489720_1590 | SAMN04489720_1592 | Hypothetical protein. | Hypothetical protein. | 0.466 |
SDH55141.1 | SDH55240.1 | SAMN04489720_1590 | SAMN04489720_1593 | Hypothetical protein. | Putative peptidoglycan lipid II flippase. | 0.466 |
SDH55171.1 | SDH22680.1 | SAMN04489720_1591 | SAMN04489720_0471 | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | 0.763 |
SDH55171.1 | SDH55141.1 | SAMN04489720_1591 | SAMN04489720_1590 | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Hypothetical protein. | 0.639 |
SDH55171.1 | SDH55203.1 | SAMN04489720_1591 | SAMN04489720_1592 | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Hypothetical protein. | 0.645 |
SDH55171.1 | SDH55240.1 | SAMN04489720_1591 | SAMN04489720_1593 | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Putative peptidoglycan lipid II flippase. | 0.645 |
SDH55171.1 | SDH78682.1 | SAMN04489720_1591 | SAMN04489720_2386 | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.659 |
SDH55171.1 | eno | SAMN04489720_1591 | SAMN04489720_2560 | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.701 |
SDH55171.1 | pnp | SAMN04489720_1591 | SAMN04489720_0476 | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.879 |
SDH55171.1 | rph | SAMN04489720_1591 | SAMN04489720_2841 | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.618 |
SDH55171.1 | whiB | SAMN04489720_1591 | SAMN04489720_2497 | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.651 |
SDH55171.1 | whiB-2 | SAMN04489720_1591 | SAMN04489720_2582 | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.673 |
SDH55203.1 | SDH55141.1 | SAMN04489720_1592 | SAMN04489720_1590 | Hypothetical protein. | Hypothetical protein. | 0.466 |
SDH55203.1 | SDH55171.1 | SAMN04489720_1592 | SAMN04489720_1591 | Hypothetical protein. | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.645 |
SDH55203.1 | SDH55240.1 | SAMN04489720_1592 | SAMN04489720_1593 | Hypothetical protein. | Putative peptidoglycan lipid II flippase. | 0.867 |
SDH55240.1 | SDH55141.1 | SAMN04489720_1593 | SAMN04489720_1590 | Putative peptidoglycan lipid II flippase. | Hypothetical protein. | 0.466 |
SDH55240.1 | SDH55171.1 | SAMN04489720_1593 | SAMN04489720_1591 | Putative peptidoglycan lipid II flippase. | poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.645 |
page 1 of 2